Basic Information | |
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Taxon OID | 3300025251 Open in IMG/M |
Scaffold ID | Ga0208182_1005849 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3953 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (57.14%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition |
Source Dataset Sampling Location | ||||||||
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Location Name | Mediterranean Sea | |||||||
Coordinates | Lat. (o) | 43.29 | Long. (o) | 8.1 | Alt. (m) | Depth (m) | 2535 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F002100 | Metagenome | 593 | Y |
F002150 | Metagenome | 589 | Y |
F003270 | Metagenome | 496 | Y |
F008596 | Metagenome | 331 | N |
F021554 | Metagenome / Metatranscriptome | 218 | N |
Protein ID | Family | RBS | Sequence |
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Ga0208182_10058493 | F003270 | N/A | MVKTPRRRKKRKNGKHKSIKSIVRKAADKLAAPVAFWSQLSQKDYEVLNASPEYHALDYLGKLKVAANILTGSLTGKVAFNDQYNPTPNGSPRINPAGVINKWTGIGIAGKIYGAVGKTMKLPESAAIDRIGSKIIYGGAIGGFFDPPSAGGRITTYAVTPNVVVQNRATTNRSYAVAQRNRRFMPLDSFDYSTGSAFR |
Ga0208182_10058494 | F008596 | GGAG | MSGAWDIATATSIGTGSAKTQINGGNNLTKPTQAVNLVEVVPYISSSGAMTAGESLAVTLELDSFSVDLLPKRIIVPPIQSGLGTTIAQINPLLEAYECNTGLQEGATSQFIVSGTNQVAPTVATNLACALHYSTTPPRRPEHFYHKPDDETAGVTTATTHTGNSFTVNDGMWLEDMYLSVFTGTYTVSESLTGYGTFSSNDFGNSLPLKIPMQPGCASLGGTGTQAILAMASYHNTHMPMKTSCKINTSFTNDIAQTAAASFVMGVGYTKQ |
Ga0208182_10058495 | F002100 | AGG | MSFKPVLIKPTYDIANFGEDVTLPLNCITGTGTTTLTPSTATFVQVLEDSRIPIDSVPMVVTDSDKMELIHAGNDSDFDETFDWLPDMSAQAYQVAFNFCVGMKCSIYSSGNFKISSVQVVMKQIGGGEGDVTILNKIIDPGMSNMTSTGEQVAIINFSTKTSAKVFDKPLTFQIKVNTDSGVGTYQTGLVPLFCYFAAAVPKTWTTSSVLMHIHADLQHAFPIFRDEDNMSMVDTGIGL |
Ga0208182_10058496 | F021554 | AGG | MIIEEIPFFVEFMITGIVLGFGYGFTKLFLSHAKDKNKIIRRERKAETDNKLENELDKYLDNAPAIIQHLEAEIANLKEKGSTPEQTHRLESELNQARMLQKYEPLIRIAGKPLLKKAMSLIDNFKV |
Ga0208182_10058497 | F002150 | AGG | MVAIPATILAKEIGKRGTKVSGEFLEKKLGYNFVDLVTKLALFYIIAFLIAKYMEAIIYFQGGLSTVAGFFGIKMAQADQLPKQWVELFVDTNQQTYTSTPTASGQFNPPGWDRPYDYGTPEHQQAEPYLFPEKEVKFKFWDLVNAIVIFYIGWETYKYYRNGGRDFLTLAIFSLLGLMVGVLSFSKFLGKFSLNKFQEENK |
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