Scaffold Ga0208182

Basic Information
Taxon OID	3300025251 Open in IMG/M
Scaffold ID	Ga0208182_1005849 Open in IMG/M
Source Dataset Name	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025251 Open in IMG/M

Scaffold ID

Ga0208182_1005849 Open in IMG/M

Source Dataset Name

Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3953
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

3953

Total Scaffold Genes

7 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (57.14%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	Mediterranean Sea
Coordinates	Lat. (^o)	43.29	Long. (^o)	8.1	Alt. (m)	Depth (m)	2535
Location on Map

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Source Dataset Sampling Location

Location Name

Mediterranean Sea

Coordinates

Lat. (^o)

43.29

Long. (^o)

8.1

Alt. (m)

Depth (m)

2535

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F002100	Metagenome	593	Y
F002150	Metagenome	589	Y
F003270	Metagenome	496	Y
F008596	Metagenome	331	N
F021554	Metagenome / Metatranscriptome	218	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0208182_10058493	F003270	N/A	MVKTPRRRKKRKNGKHKSIKSIVRKAADKLAAPVAFWSQLSQKDYEVLNASPEYHALDYLGKLKVAANILTGSLTGKVAFNDQYNPTPNGSPRINPAGVINKWTGIGIAGKIYGAVGKTMKLPESAAIDRIGSKIIYGGAIGGFFDPPSAGGRITTYAVTPNVVVQNRATTNRSYAVAQRNRRFMPLDSFDYSTGSAFR
Ga0208182_10058494	F008596	GGAG	MSGAWDIATATSIGTGSAKTQINGGNNLTKPTQAVNLVEVVPYISSSGAMTAGESLAVTLELDSFSVDLLPKRIIVPPIQSGLGTTIAQINPLLEAYECNTGLQEGATSQFIVSGTNQVAPTVATNLACALHYSTTPPRRPEHFYHKPDDETAGVTTATTHTGNSFTVNDGMWLEDMYLSVFTGTYTVSESLTGYGTFSSNDFGNSLPLKIPMQPGCASLGGTGTQAILAMASYHNTHMPMKTSCKINTSFTNDIAQTAAASFVMGVGYTKQ
Ga0208182_10058495	F002100	AGG	MSFKPVLIKPTYDIANFGEDVTLPLNCITGTGTTTLTPSTATFVQVLEDSRIPIDSVPMVVTDSDKMELIHAGNDSDFDETFDWLPDMSAQAYQVAFNFCVGMKCSIYSSGNFKISSVQVVMKQIGGGEGDVTILNKIIDPGMSNMTSTGEQVAIINFSTKTSAKVFDKPLTFQIKVNTDSGVGTYQTGLVPLFCYFAAAVPKTWTTSSVLMHIHADLQHAFPIFRDEDNMSMVDTGIGL
Ga0208182_10058496	F021554	AGG	MIIEEIPFFVEFMITGIVLGFGYGFTKLFLSHAKDKNKIIRRERKAETDNKLENELDKYLDNAPAIIQHLEAEIANLKEKGSTPEQTHRLESELNQARMLQKYEPLIRIAGKPLLKKAMSLIDNFKV
Ga0208182_10058497	F002150	AGG	MVAIPATILAKEIGKRGTKVSGEFLEKKLGYNFVDLVTKLALFYIIAFLIAKYMEAIIYFQGGLSTVAGFFGIKMAQADQLPKQWVELFVDTNQQTYTSTPTASGQFNPPGWDRPYDYGTPEHQQAEPYLFPEKEVKFKFWDLVNAIVIFYIGWETYKYYRNGGRDFLTLAIFSLLGLMVGVLSFSKFLGKFSLNKFQEENK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208182_1005849

Overview

Ecosystem & Geography

Associated Families

Sequences