NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208182_1005849

Scaffold Ga0208182_1005849


Overview

Basic Information
Taxon OID3300025251 Open in IMG/M
Scaffold IDGa0208182_1005849 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3953
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)43.29Long. (o)8.1Alt. (m)Depth (m)2535
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002100Metagenome593Y
F002150Metagenome589Y
F003270Metagenome496Y
F008596Metagenome331N
F021554Metagenome / Metatranscriptome218N

Sequences

Protein IDFamilyRBSSequence
Ga0208182_10058493F003270N/AMVKTPRRRKKRKNGKHKSIKSIVRKAADKLAAPVAFWSQLSQKDYEVLNASPEYHALDYLGKLKVAANILTGSLTGKVAFNDQYNPTPNGSPRINPAGVINKWTGIGIAGKIYGAVGKTMKLPESAAIDRIGSKIIYGGAIGGFFDPPSAGGRITTYAVTPNVVVQNRATTNRSYAVAQRNRRFMPLDSFDYSTGSAFR
Ga0208182_10058494F008596GGAGMSGAWDIATATSIGTGSAKTQINGGNNLTKPTQAVNLVEVVPYISSSGAMTAGESLAVTLELDSFSVDLLPKRIIVPPIQSGLGTTIAQINPLLEAYECNTGLQEGATSQFIVSGTNQVAPTVATNLACALHYSTTPPRRPEHFYHKPDDETAGVTTATTHTGNSFTVNDGMWLEDMYLSVFTGTYTVSESLTGYGTFSSNDFGNSLPLKIPMQPGCASLGGTGTQAILAMASYHNTHMPMKTSCKINTSFTNDIAQTAAASFVMGVGYTKQ
Ga0208182_10058495F002100AGGMSFKPVLIKPTYDIANFGEDVTLPLNCITGTGTTTLTPSTATFVQVLEDSRIPIDSVPMVVTDSDKMELIHAGNDSDFDETFDWLPDMSAQAYQVAFNFCVGMKCSIYSSGNFKISSVQVVMKQIGGGEGDVTILNKIIDPGMSNMTSTGEQVAIINFSTKTSAKVFDKPLTFQIKVNTDSGVGTYQTGLVPLFCYFAAAVPKTWTTSSVLMHIHADLQHAFPIFRDEDNMSMVDTGIGL
Ga0208182_10058496F021554AGGMIIEEIPFFVEFMITGIVLGFGYGFTKLFLSHAKDKNKIIRRERKAETDNKLENELDKYLDNAPAIIQHLEAEIANLKEKGSTPEQTHRLESELNQARMLQKYEPLIRIAGKPLLKKAMSLIDNFKV
Ga0208182_10058497F002150AGGMVAIPATILAKEIGKRGTKVSGEFLEKKLGYNFVDLVTKLALFYIIAFLIAKYMEAIIYFQGGLSTVAGFFGIKMAQADQLPKQWVELFVDTNQQTYTSTPTASGQFNPPGWDRPYDYGTPEHQQAEPYLFPEKEVKFKFWDLVNAIVIFYIGWETYKYYRNGGRDFLTLAIFSLLGLMVGVLSFSKFLGKFSLNKFQEENK

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