NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208182_1007269

Scaffold Ga0208182_1007269


Overview

Basic Information
Taxon OID3300025251 Open in IMG/M
Scaffold IDGa0208182_1007269 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3400
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (25.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)43.29Long. (o)8.1Alt. (m)Depth (m)2535
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003270Metagenome496Y
F008596Metagenome331N
F008691Metagenome / Metatranscriptome329Y
F093971Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0208182_10072693F093971N/AMSENKKSKKDESENFIDTLKDLLADPHQDEAWNEKFKETVRKYFDI
Ga0208182_10072694F008691N/AMPLGYDIKEEATEVKKNLFENRDSFVMLVVAGVVGGIITRFVIPKSVTEGSVFSRFKSWFGYDEDDDE
Ga0208182_10072696F003270N/AMAKKRRRRSSKKRNGSKSIKSMIRQVVNKGAAPIAFWQQLSEKDYQVLNADGNYAALDYLGKLKVAANILTGSLTGRVAFSDQYNPSPSGQPRINPAGIINKWVGIGIMGKLYGKIGKSMKLPEAAAIDRVGSKVIFGGAVGGFFDPPGNPGGYVSTANVSPNVMVQNRSQTNRAFATAQRNRSYVPLDSFDSSTGSAFR
Ga0208182_10072697F008596GGAGMSGAWDIATATSLGTGVAKTQINSGANLTKPTQAVNLVETVPYTVSSGAYTAGESIALTAYLDSFSVDLLPKRMIVPPVQAGLGTLINIVAPILEAYECNTGLQEGATSQFIVSGQAQVANTVAPLMAMALHYSTTPPNRPEHFYHKPDNESTFTTATTNSGNDFTINDGMWLEDMYVSVFAGTPTVSQSISGYGTFSSNDFGNSLPLKVPMQPGACGLAGTMTPGNLQLASYHNTHMPMKTSCKISTAFTNDITQAATTRFIMGVGYTKQG
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