NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208182_1007272

Scaffold Ga0208182_1007272


Overview

Basic Information
Taxon OID3300025251 Open in IMG/M
Scaffold IDGa0208182_1007272 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3400
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)43.29Long. (o)8.1Alt. (m)Depth (m)2535
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018085Metagenome237Y
F023720Metagenome209N

Sequences

Protein IDFamilyRBSSequence
Ga0208182_10072722F018085GGCGGMSTDPTLDTMAQTMKVADQLLDDMHDALAEANDLFDLHPIRIRDGIPVLDHPVAGNVYVTANNTTTIIAIFNRGPGDAWWNPFLWTDAYGQRDWIPFGCGSISMFHEGSAHPGDRVLRIHLRHKLLQGWATVAEVVKQVLDREQYLELRDICEAPADATTWGPWMTAIETGA
Ga0208182_10072728F023720AGGMIQASLWDKPGLVSNEHPVTSHVAAATVKAGSQRAQVLMALWIRPSTAHSLWKNSQVLNRAGLVVSANQIATRLKELRDMGAVEYLREWPDGPYVEEDTQGGNSALVQTLTGYGRRKTAEMMASTRP
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Institute for Fundamental Biomedical Research
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