NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208182_1010708

Scaffold Ga0208182_1010708


Overview

Basic Information
Taxon OID3300025251 Open in IMG/M
Scaffold IDGa0208182_1010708 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2577
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)43.29Long. (o)8.1Alt. (m)Depth (m)2535
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006447Metagenome / Metatranscriptome373Y
F009425Metagenome / Metatranscriptome318Y
F043620Metagenome / Metatranscriptome156Y

Sequences

Protein IDFamilyRBSSequence
Ga0208182_10107082F009425AGGMTSRGLLTHYVLNRPRDHWREVSCKEIGCVNYAAGWKTILPADDIANIEMIRRSDMGFREEREDGLVVFVFAPGQECFTGQGGGHRIAVERDPILTRDNRVMEPLEFMDNWNDHQYRRSVNG
Ga0208182_10107084F043620GGAGMRLIALAVLVGMIAIIGSGLVLGWLYEGPRRLVRLAACYIGLHGRETWGVNPANQNSEPYCRDCRRFLAKAY
Ga0208182_10107087F006447N/AKLFRVGFANRHVSTVVVLAIVVSAAAVSVGLYFAIKDVASSTYNWPEPAVYQVTTAGLQTMGEKNADYPDGTESQTLSIRLADGARISNLSISGTDLGRAGIARALDISPLTQGVTGSTAYLFVGNLTMTGSAFPTLKMEQSEVGTLTTGLLCDGHTMAATITNTIPDQVLTSKRLSSVYTVADSIVDKIQIHITGNSGAYIDQLTLSDVQAWNGEAYLSRMKVGNLTMNNTSQIGDGSGVDSASCYFDSSVLARNISNTIQDKPIKVQ
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