NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208182_1017520

Scaffold Ga0208182_1017520


Overview

Basic Information
Taxon OID3300025251 Open in IMG/M
Scaffold IDGa0208182_1017520 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1829
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)43.29Long. (o)8.1Alt. (m)Depth (m)2535
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024653Metagenome205Y
F038713Metagenome165Y
F041144Metagenome160Y

Sequences

Protein IDFamilyRBSSequence
Ga0208182_10175203F038713AGGAGMIFVKFTIDNGWSEAYLDYAWFKDYGLAHYENGESITDKDIIRDVYGEGRSDHDFEENFNEETKVYTDYDDDTIAVHRVQEMTQKELDVLVKMGVLYR
Ga0208182_10175206F041144AGGAGGMLSDAITTVGFALQSYVNTCIHEDTEENRAERVELTLAWSIITKHLKENEDD
Ga0208182_10175207F024653AGGAGMSRDIDTIPTVRRHIVSYKIYAEWSDNPKLVEIEHEMDGHLENTFNDWLRDIEDEEDLKC
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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