NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208182_1021656

Scaffold Ga0208182_1021656


Overview

Basic Information
Taxon OID3300025251 Open in IMG/M
Scaffold IDGa0208182_1021656 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1577
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)43.29Long. (o)8.1Alt. (m)Depth (m)2535
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000704Metagenome928Y
F000730Metagenome / Metatranscriptome917Y
F060030Metagenome133N

Sequences

Protein IDFamilyRBSSequence
Ga0208182_10216562F000704AGGTGGMPHIDDRLEPSKIKSVSVYNVGDYGEDLFLPFTDVGLTETAITFSSATLTRDLEHSNQPMDDFPAVYSDTDSGILLNEGNDTAFSQTYSYNPDMTAIIYAIHLSFPAAVICSAFTSGTLNVGALHLKITERSTNDRLLYENTFQSDAANLTGTGTSLHIFQRDVVETILVRKGNPIDILVELVTVTTGTNTRQEGIVNLAPYIKTAVLKRFTPAGIALHLHADLSHADGVYKYTKNRVSNLGQ
Ga0208182_10216563F000730GAGLVNELLPAELVPLVWFSVISVTVYVFFRVFSSTLKEKFRQTNLSRKKAESSGHTDDQIDDLINNAPTALNHVNSIIAEQKAKGVSDEQMKGIYQKKQMLELVTNNAEVINIIGKPIIKKILGVVKSL
Ga0208182_10216564F060030N/ALLEEGVKRGLKASREYSVSVLGYDFIGLVGRLIVFFLAAFLINAYFQATISGNIWLNSLGSFFGMKFPQSLPQWVTDLFTVGYHNINFWQIVQIIGIILVIVEYT
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