NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208182_1030799

Scaffold Ga0208182_1030799


Overview

Basic Information
Taxon OID3300025251 Open in IMG/M
Scaffold IDGa0208182_1030799 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1228
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)43.29Long. (o)8.1Alt. (m)Depth (m)2535
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000563Metagenome1022Y
F005011Metagenome / Metatranscriptome415Y
F028527Metagenome191N

Sequences

Protein IDFamilyRBSSequence
Ga0208182_10307992F000563AGAAGMRYKFKVYEEGKDIEDKEAMSFKKLLKSLVTPNPKWTGWIAYKNKKDKYVKHSILNGKRV
Ga0208182_10307993F028527AGGMKLDTWLDKTYKLRAETAVGPKVMWGDGKKHGTNEIYFNKWLGTPKYDNGLDILFKRGYSPIDALVEWLRYTPWKKKWGRKKKK
Ga0208182_10307995F005011N/ARKKKTMQETITKYQSKFDRLMTSIEKDKILKKMPGNATAGIAVQMIKSLKSYLKANRA
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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