NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207899_1006140

Scaffold Ga0207899_1006140


Overview

Basic Information
Taxon OID3300025257 Open in IMG/M
Scaffold IDGa0207899_1006140 Open in IMG/M
Source Dataset NameMarine viral communities from the Deep Pacific Ocean - MSP-134 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2723
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.3272Long. (o)-52.639Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001034Metagenome / Metatranscriptome798Y
F003481Metagenome484Y
F006447Metagenome / Metatranscriptome373Y

Sequences

Protein IDFamilyRBSSequence
Ga0207899_10061402F001034AGAAGGMQVSQQTYEDAQYQASEPIGPQEPIPAGVHDIELSWDRKRGYMRVIIDGKTWHFKEYLGKAQVTGTDNKRGRIYLRAMARIDGETLTTYRDPNALPHQEVKGEKREPTHNRLCYRRQSQEWRLRDERMDWNHPEALRFTKNYVGDLNAEWHMSDSVAHIYHNGFSIIDSDDVAHLYE
Ga0207899_10061404F003481GAGVAEADDLQKQLDEAREELEKLKAPEPSDDKSANRVQMTSGDIVRLTIAAPVVFVWLFLGSRVIISATTSTAVLENIEPLLLALSILTIPVTGILASLFKIDGNGGDKK
Ga0207899_10061405F006447GGAGGMSLIEKLAHMVGNRKVPVPAIPGLSVPSISFGSKATLKIIFLTIIVSGAAVAVGMYFAIRDVVGSTYNWPDAAVYQVTEDGLQTMGKKNPKMEDGTDSQTLSIRLADGARISTLRIKDSDVGRTGIARSLDISPLTTGVTGAQAYLWVGNLTITDSSFPTFSWQNSEVGTLNTGMLCDGHTMAATVSNTVSDLELSSERASSVYEASSTVDRIQIHITGNTGAYVNHLIIDNLDAWSGAAFFDRLKVGTVTFGNTNRIGDGSGIDSASCVVQSSVSGRVINNTIQDRPITVR
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