NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207899_1039917

Scaffold Ga0207899_1039917


Overview

Basic Information
Taxon OID3300025257 Open in IMG/M
Scaffold IDGa0207899_1039917 Open in IMG/M
Source Dataset NameMarine viral communities from the Deep Pacific Ocean - MSP-134 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)777
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.3272Long. (o)-52.639Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003161Metagenome504N
F007893Metagenome / Metatranscriptome343Y

Sequences

Protein IDFamilyRBSSequence
Ga0207899_10399171F007893N/AFEITGPVFDGSGLRVMQGIINRGLLDIAILEGANKVKDQLYGPPASQYWKADPKTRHGAHTRDLKRRVAASQPSDNLAVFDAGGIPYAPKVEALYGMFSKATAAINRDKANLYHKYIGGALIEAFD
Ga0207899_10399172F003161GAGGLSRSGALDRIDVLLSTITDPVFTAVIRAEPLALSGTPIIAYWVQSRTNGWQTLGDIGSTTTIMVRAYFRLQASADVRESIELELWDAMVEVDTKLRSDANLDGNCTDSTVGNATVATLDMGGALYRTATIPF
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