NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207895_1012008

Scaffold Ga0207895_1012008


Overview

Basic Information
Taxon OID3300025260 Open in IMG/M
Scaffold IDGa0207895_1012008 Open in IMG/M
Source Dataset NameMarine viral communities from the Deep Pacific Ocean - MSP112 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1566
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)15.9164Long. (o)-124.5211Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000704Metagenome928Y
F001922Metagenome617Y

Sequences

Protein IDFamilyRBSSequence
Ga0207895_10120081F000704N/APSQVKSLAVYDVASYGTDLFLPLTDVGLTETALTFSGVTMTRDTSDSNQPLDSFPRVYSDTDSGLLLNEGSNTVYNQTYTLDPDMTAVIYKLSLNFCAVLTCSAYTNGGLNIGGLHIKISERSSNDRLLYENTFQSGAATLSATGTSMHWFTQDIVETIKVRKGNPIDIQLNLITVVTGTNTRQEGYAPVAPYLKTAVMKSFYESGISLHLHPDLSHADGVFKYKKSRVSLLGQ
Ga0207895_10120083F001922GGAMVIQKLLLEEGVKRGLKASREYSVSVLGYDFIGLISRLAIFFITGFLINAYFQASIQGGIWLNSLAGFFGVSFPTTLPDWTIKLFTTGFHNITFWQIVQTIAVLIVVVEYMQYDRMLKQNNEQPNITTTAVFAMIGLGLSLITFPQIVQKFKEMRILSKAP
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