NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208029_1001148

Scaffold Ga0208029_1001148


Overview

Basic Information
Taxon OID3300025264 Open in IMG/M
Scaffold IDGa0208029_1001148 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s12 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12574
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (83.87%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)39.48Long. (o)6.37Alt. (m)Depth (m)2851
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F059367Metagenome134N
F060343Metagenome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0208029_100114829F059367GGAGGMSLFEKLAHLVGHRKVPVPAMPGISVPRISFGSRATLKIIVFTVLVSLAAVGTGMYFTIRDVVHGSWNWPDSGAAYYASEDGLGTMGQQLPLNEDGTESQTLEIRMADGSRMESLTAVLEMGKASVDCMAVERAAGTGYLWVDTFTMNELVAPTLTMNASFIHKLTLSGNVDGHHVGPTQNSAGAPDITVESTRGAGIYNASGTVDRLLISLAGDAYIKDVSITGHCSTGPIDLDFIKAGNFNLTNVEIGDDGNINTVAVDIGSDTIIHTLADTFVDKSIIVK
Ga0208029_100114831F060343N/AAQVLSCDNKRGRLNLRAIAQINGETLTMWRDPNAPPHEEVEGIRREKTHNRLCYRRPSQEWRLRDERMDWNHPDALVLTKSYVGDLNAEWHANDSIAHIYHNGYAIIDKDDVAHLYE
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