NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0208029_1002008

Scaffold Ga0208029_1002008


Overview

Basic Information
Taxon OID3300025264 Open in IMG/M
Scaffold IDGa0208029_1002008 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s12 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8247
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (92.86%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)39.48Long. (o)6.37Alt. (m)Depth (m)2851
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008778Metagenome / Metatranscriptome328Y
F012399Metagenome281Y
F068118Metagenome / Metatranscriptome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0208029_10020081F068118N/ARTAAERSLSPPCVPHRKDAMAKAKCVQNVTFGATGEVYESGKVYDVPAATLKRYGEYFEKMAAKPQNKAKTTEENK
Ga0208029_10020084F008778GGAGGLSRSGALAQIDTLLSAISDPAFVAVYRGEPLAIAGSPVLAFWLTGRTNDFQTLGDIGSRVTVQIRAYFRMQDTPDVRESIEEEVWDAMVQIDTQLRSDADLGGNVTDSSVGPASVGYTTMSGGVFRTVSVSYEMQLMGEVGITP
Ga0208029_10020087F012399GGAMVVATNGIKPYVIQRRRAILEFEEIEYEGLHVEARLDVDLRTFLDLQSLAGAGDANPSDLRSAFSMFGDEILHSWNMTDEDGTVLPADASGFLSLPPALATKILGSWTEAATTAGEVSAS
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.