NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208029_1002228

Scaffold Ga0208029_1002228


Overview

Basic Information
Taxon OID3300025264 Open in IMG/M
Scaffold IDGa0208029_1002228 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s12 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7655
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)39.48Long. (o)6.37Alt. (m)Depth (m)2851
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001922Metagenome617Y
F014859Metagenome259N

Sequences

Protein IDFamilyRBSSequence
Ga0208029_10022282F001922AGGMVIQKLLVEEGIKRGLKESQKYSVSVLGYDFIGLVSRLAVFFVMAFLINSYFIATIQGGIWLNSLGSFFNMKFPSTLPQWLTQLFTTGYKGFTFWNLVTTISVLIVVVEAMQYDKMLKEKGQKPNITTLAVFGVIALGLSLITFPTIIQKLQEQRIIKNA
Ga0208029_10022283F014859AGGLVSELIPPEIIPLVWFAGISVTVYFFFRKFSDVIKEKIKHTTRKSKTVNTEEAGDQFDNLVNNAPRILDEVNKEIAAQREQGVTDEQMKGLLQKKQLLELGTSIPPEVYNLVGKPLVKKLIGFVGKI
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