NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208029_1002564

Scaffold Ga0208029_1002564


Overview

Basic Information
Taxon OID3300025264 Open in IMG/M
Scaffold IDGa0208029_1002564 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s12 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6924
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (76.92%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)39.48Long. (o)6.37Alt. (m)Depth (m)2851
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009368Metagenome / Metatranscriptome319N
F021552Metagenome / Metatranscriptome218Y

Sequences

Protein IDFamilyRBSSequence
Ga0208029_100256411F009368N/AMVFHFDAAVQIMEEILTHELVNPEELYEILEYKEKDSNSIQEERLWKMFKSFLVRSNRLPADVIPFSAELRGPDVIKE
Ga0208029_10025642F021552AGCAGGMELFSYALNVNLLRGTGCTTFRGAQLPVRTVEKWSTKKNGKCKGMIRHLIGKSLSTCTKDILDGTIDEGEVLLICTSTKHPFNDPNHFYDMRYFESVEEAELLQRLYKQGRIHQPRILSDSYNYGKEEYLFPYDNYRHQSWFSIMDQALMDIEYESDYDDGADYHLQKKESVE
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