Basic Information | |
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Taxon OID | 3300025264 Open in IMG/M |
Scaffold ID | Ga0208029_1009218 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s12 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2843 |
Total Scaffold Genes | 9 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (88.89%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition |
Source Dataset Sampling Location | ||||||||
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Location Name | Mediterranean Sea | |||||||
Coordinates | Lat. (o) | 39.48 | Long. (o) | 6.37 | Alt. (m) | Depth (m) | 2851 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F004651 | Metagenome / Metatranscriptome | 429 | Y |
F052411 | Metagenome | 142 | N |
F067113 | Metagenome / Metatranscriptome | 126 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0208029_10092181 | F052411 | GGAGG | MTTAIESQYHFTAEVKSKGKQQNRDGWSMVVDWKLPGSKFDLTLYG |
Ga0208029_10092182 | F004651 | AGGAGG | MTTSETIEHHYGEAHAHLSDDELLAEMEHIGAILDGFKNTLGHLEQEAYRRIEERGATSIPSETYICEMETGWKYDQPSFGPLKEVFNDADLKRCLTPAHTEEVKVEDKWATGTVKSLATKYGAEALRIVDHARTESRGRLVFKRRAK |
Ga0208029_10092186 | F067113 | GGAG | MPKATMHRVECLDCGLVAFRMIPIDIPVYCRQCGSAALMWRPV |
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