Basic Information | |
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Taxon OID | 3300025264 Open in IMG/M |
Scaffold ID | Ga0208029_1009476 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s12 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2782 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (100.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition |
Source Dataset Sampling Location | ||||||||
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Location Name | Mediterranean Sea | |||||||
Coordinates | Lat. (o) | 39.48 | Long. (o) | 6.37 | Alt. (m) | Depth (m) | 2851 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F004651 | Metagenome / Metatranscriptome | 429 | Y |
F049761 | Metagenome | 146 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0208029_10094767 | F004651 | AGGAGG | MTTSETIQNHYGEAHAHLTDDELLAEMEHIGAVLDGFKNTLGHLEQEAYRRIEERGATSIPSETYICEMEIKRGYDQPSFAPLKEIFNEADLAKCLTPAHTEEVKVADKWATATVKSLSDKYGADHPRGNAPKVVQNALTESRGRLKFARRETK |
Ga0208029_10094768 | F049761 | GGAGG | MTTAIESQYHFTAEVKSKGKQQNRDGWAMVVDWKLPGSKFDLTLYGQDWDIVQGFEVGETAIITINQGNLKKDKDGKYSTDYFWDMVSIEP |
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