NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208029_1011317

Scaffold Ga0208029_1011317


Overview

Basic Information
Taxon OID3300025264 Open in IMG/M
Scaffold IDGa0208029_1011317 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s12 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2465
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)39.48Long. (o)6.37Alt. (m)Depth (m)2851
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000704Metagenome928Y
F001606Metagenome664N
F031891Metagenome / Metatranscriptome181N

Sequences

Protein IDFamilyRBSSequence
Ga0208029_10113171F031891GAGLASELIPPEIVPIVWFACISVTVYVFFRVFSSTLREKFKQTNLSRRQAEKGGNTDGQID
Ga0208029_10113172F000704AGGTGGMPHENGEIQPSQVKSQPVYDVASYGTDLFLPLTDVGLTETALTFSGVTMTRDTSGSNQPLDSFPFVYSDTDDGLLLNEGNNTIYNQTYTLDPDMTAILYKISLNFCAVLTVSAYTSGNFNIGALHIKITERSTNDSLLYENTFQSGAANLSATGTSMHWFTQDIVETIKVRKGNPIDIQLDLITTTGSGTRQEGYAPLAPYQKTAVLKAFTPTGISLHLHPDLSHADGVFKYKKDRVSLLGQ
Ga0208029_10113173F001606GAGGMTYGYDDVTFTSTAASSTAEVQLNDGTSLSAPDPAHAFNAVVPYQMELGAFTVDESLLTAFRIQSDDVAIEPKKFVLPNVNTGDAAFTSVAAPALLAYPINTPLAGGEHLNFYAEPLTQNTAAAGVGATVLYDTVSTNGAEQYYTRPSSETAGATAINTRTQGGDMTIQGGNEITGLYTVVSGATATASQHDVGYSEFLSPDFNTSMPYRVAVQPTATGLGSAANAITGGGGIMEYKMPRGKGIPLANNVTITNYYTNRDARAGGADNFINFVRYSKN

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