Basic Information | |
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Taxon OID | 3300025264 Open in IMG/M |
Scaffold ID | Ga0208029_1015673 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s12 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1981 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (42.86%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition |
Source Dataset Sampling Location | ||||||||
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Location Name | Mediterranean Sea | |||||||
Coordinates | Lat. (o) | 39.48 | Long. (o) | 6.37 | Alt. (m) | Depth (m) | 2851 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F009425 | Metagenome / Metatranscriptome | 318 | Y |
F022755 | Metagenome | 213 | N |
F043620 | Metagenome / Metatranscriptome | 156 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0208029_10156731 | F022755 | N/A | VVTLNGTTPKAKKGFRIPDQTAHITFSGTDYDGAEIWVKLNVSFAHYIALREAAEGDDQAKMAELFGGEVLMEWNLEDASGEPVPADGAGMLQIPLSLAMLIVQHWIEAVSAVPVPLEPPSGDLSTLAAASTATGE |
Ga0208029_10156733 | F009425 | GGA | LRMTSRGLLTHYVLNRPRDHWREVSCKEIGCVNYAAGWKTILPADDIANIEMIRRSDMGFREEREDGLVVFVFAPGQECFTGQGGGHRIAVERDPILTRDNRVMEPLEFMDNWNDHQYRRSVNG |
Ga0208029_10156735 | F043620 | N/A | LIALAVLVGMIAIIGSGLVLGWLYEGPRRLVRLAACYIGLHGRETWGVNPANQNSEPYCRDCRRFLAKAY |
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