NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208029_1018843

Scaffold Ga0208029_1018843


Overview

Basic Information
Taxon OID3300025264 Open in IMG/M
Scaffold IDGa0208029_1018843 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s12 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1756
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)39.48Long. (o)6.37Alt. (m)Depth (m)2851
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008559Metagenome331Y
F017323Metagenome241Y
F081433Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0208029_10188431F081433GGAMTVKHFKKLPEHLQPRILSAVAFIHTASPDINKAAERINKLRKHLSQKELRYVMALLVFDELIDMVADSEGFKNIMPTKRTIN
Ga0208029_10188432F008559GAGGMKINKAIFYIKYYATKHGETIERKGQLDGIAQGEYVAKKGYPCFNYLDIWATEKFGTPQYRTATHKWEFNDSKTL
Ga0208029_10188433F017323AGGAGMSEEKKKVFLIIKKTYWDHDGETWFDVAEHADTKERADQCINALNTLKNDKKVSYLICEVAYENK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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