NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208029_1021011

Scaffold Ga0208029_1021011


Overview

Basic Information
Taxon OID3300025264 Open in IMG/M
Scaffold IDGa0208029_1021011 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s12 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1628
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)39.48Long. (o)6.37Alt. (m)Depth (m)2851
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005551Metagenome397Y
F017935Metagenome238Y
F027809Metagenome193N

Sequences

Protein IDFamilyRBSSequence
Ga0208029_10210111F017935GGCGGLNDATVAAIWILSFGLYLLIYTYWIPLRTQQRIEQWLRSEESDETLLMSLEVITKRIREQML
Ga0208029_10210113F005551GAGMTLGPSKSVSRAKDGKIYGWSGSYGLTSSAVTLLDYTNPSAFYLTRVTLGIDWSGISAGEVLSYTINVDNQALFVEKLVVASANIGQQPKMYEFIIPPNSTVKVQATESANNGGISCILTGYRV
Ga0208029_10210115F027809N/AFVLACRLLGSNMSEQNLTLAGSCGDVADAGGTPQFNMIPTNFSVAGVNNIDLQVAFQYTSGTPTASSLSVTLYFE
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