Scaffold Ga0208029_1028132

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208029_1028132

Scaffold Ga0208029_1028132

Overview

Basic Information
Taxon OID	3300025264 Open in IMG/M
Scaffold ID	Ga0208029_1028132 Open in IMG/M
Source Dataset Name	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s12 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1329
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	Mediterranean Sea
Coordinates	Lat. (^o)	39.48	Long. (^o)	6.37	Alt. (m)		Depth (m)	2851
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003161	Metagenome	504	N
F007893	Metagenome / Metatranscriptome	343	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208029_10281322	F003161	GAGG	LSRSGALDRIDVLLSTITDPAFVAVIRAEPLALSGTPVLAYWVQARTNGWQTLSDIGSTTTIMVRAYFRLQASADVRESIELELWDAMVEVDTKLRSDANLDGNCTDSTVGSATVATLDMGGALYRTATIPFDIQLYEEITITP
Ga0208029_10281323	F007893	GGAG	MAEPFGVHFEVTGPVFDGTGLRVMQGIINRGLFDIAVLEGANKVKDQLYGPPASQYWKADPKTRHGAHTRDLKRRVAASQPSDNLAVFDAGGVHYAEKVEALYHMFENATKAIERDKAALYHKYIGGALIEAFD

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