NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208029_1051169

Scaffold Ga0208029_1051169


Overview

Basic Information
Taxon OID3300025264 Open in IMG/M
Scaffold IDGa0208029_1051169 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s12 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)866
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)39.48Long. (o)6.37Alt. (m)Depth (m)2851
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008925Metagenome326Y
F012581Metagenome279N
F013187Metagenome273Y
F029779Metagenome187Y

Sequences

Protein IDFamilyRBSSequence
Ga0208029_10511692F008925AGGAGMTTKSKPTINAVTLNLINKLKKIDDTINEGAWEYINIGDVIRVQDAFAEVISYYDLKKEGGIHDYGADKGKYQQFWHSDYVCHTDPNAYDPSKVEEEDDEXI
Ga0208029_10511693F029779AGGAGMMSDKEKYEEICEALVGIDATERYTHEDILSYIYNLKDTEEKYYDNKK
Ga0208029_10511694F012581AGGAGVAKYTLYAKKVYYYRKDINAQDKKSAEKRSADYEADDNAERLFEPSGEEFYITSIEESDDEX
Ga0208029_10511695F013187N/AMPTKKIKKKPRRNTWVYIYGDEMLEIWEHFGIDFPNPDDRMKLKFVKYETKEMQRG
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