NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208179_1000853

Scaffold Ga0208179_1000853


Overview

Basic Information
Taxon OID3300025267 Open in IMG/M
Scaffold IDGa0208179_1000853 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17354
Total Scaffold Genes38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (28.95%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)38.55Long. (o)13.18Alt. (m)Depth (m)3511
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042023Metagenome / Metatranscriptome159Y
F043614Metagenome / Metatranscriptome156Y
F045140Metagenome / Metatranscriptome153Y
F080506Metagenome / Metatranscriptome115N
F087296Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0208179_100085311F045140GAGGMIRLLTIFLLSASIAQSVSMKIKVAHQKATHMNQPYGSPGGIYFEIKDMDPLLPYWVQYSHDFKIWKDLYNFGSFGTNSTSPLFHWFELPPEKCFFRIIQKW
Ga0208179_100085314F087296N/AMTALAEIKEEQEAVQYSEWVDKWQEIESDMMYNVPWKKLYERVGLSKSIGGRWTIAEGKFWAEYLRFVTEVYHYGGTLDELKRRITDQRIYNKSIK
Ga0208179_100085316F080506N/AMKLHEAVRIGKGLDFTTVRECVDSIHSFSPQLFPYSEINEELNELYEDYDNFKAHPETWMETLCGMKP
Ga0208179_10008532F042023N/AMKHMSLEKRVFLCFLILILFLSSGCHTTKYEWFPNKDGTDLDVNKVALPDRAELGGIEIDVLKITL
Ga0208179_10008538F043614N/AMKNITLTFERKSNTVWSDGDDYYATYVHEPTKSKWKILWQYSQCGEHIGSIQKLVTTGSPTSQGGERITWEYQGEVFRFKKLEQGLKVEIDLLESDETYESVSRALATPPPSLESEPQEERVSFEPEMPNLRENPLGWA
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