NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208179_1001191

Scaffold Ga0208179_1001191


Overview

Basic Information
Taxon OID3300025267 Open in IMG/M
Scaffold IDGa0208179_1001191 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13776
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (90.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)38.55Long. (o)13.18Alt. (m)Depth (m)3511
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027816Metagenome193N
F037430Metagenome168Y
F043886Metagenome155Y

Sequences

Protein IDFamilyRBSSequence
Ga0208179_10011911F043886N/AMKSKEELLTGKAFRELQREWYKRLDDSGFNDIERSGKRRQDLFNEYGGILQKPLSVIRHKYNIFTQYYYEISSFLSQNATFLPRIDRKILELHGDGHTIQYISNYLRNNFKYPLNKKGRKGKPYSVYYVHTKLKYLKLLILLYSRTNCMESVKKSWQSM
Ga0208179_10011916F027816GGAGMKSFKDKNHEVAHNMMQITAEILDDIFEKIDRIAVKNSHRERNGLKLIDSGHFRWDIKQLKINTKNKLESIMALLETYEDETRLITTEDDT
Ga0208179_10011918F037430GGAGGMKKYEIDAIRCYQSVMFDKRQETFFATRQINNKLPIDLEIIEELGMVSIKSESDHILIPLTNVSAIYLKSPIKVAQAEKDKIERAKVSTPQRIDKPRVKRTAYRG
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