NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208179_1001471

Scaffold Ga0208179_1001471


Overview

Basic Information
Taxon OID3300025267 Open in IMG/M
Scaffold IDGa0208179_1001471 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11993
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)38.55Long. (o)13.18Alt. (m)Depth (m)3511
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005883Metagenome / Metatranscriptome387Y
F019664Metagenome / Metatranscriptome228Y
F076182Metagenome / Metatranscriptome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0208179_100147112F005883GGAMNALKKFGTNGMMYRRGHQIVLENERTGEHVAVKVVQYDSIQGWLAENGEGEWQWYHEKENQKWPEGTECWKYVKKVGT
Ga0208179_100147118F076182N/AMSALAAGLLILGCNQAAEALDVDFVSDVTVASHGVVIGMDQDGDEFSVGAAGLTVSTSDTSQLGIEYASTIWGVTGSASYSYTSDDEHALGFDTSTSLLGVNLDAGIDWNIDDASFAGTVGTGYSMFGLDGSATTNWDLDDFAYEGMDVTAGYTWAVTDSFSVRPNVTIPFDDGFSRGDLTAGLSISLSFGSSSSE
Ga0208179_10014717F019664N/AVKETDDDKQVDGLDAGAVPATSTNSRVMYQGIFDFAKVLNAYYYTPDEWSRQGMWGPLPDDRNTELRGVKQHRQTDETLFEESDTKT
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