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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025267 Open in IMG/M |
| Scaffold ID | Ga0208179_1001983 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 9934 |
| Total Scaffold Genes | 17 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 16 (94.12%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → Gimesia → Gimesia maris | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Mediterranean Sea | |||||||
| Coordinates | Lat. (o) | 38.55 | Long. (o) | 13.18 | Alt. (m) | Depth (m) | 3511 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003515 | Metagenome / Metatranscriptome | 482 | Y |
| F003706 | Metagenome | 473 | N |
| F015220 | Metagenome | 256 | Y |
| F021556 | Metagenome / Metatranscriptome | 218 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208179_100198310 | F003706 | AGGA | MSEVSDVELGKLIQQISTLEAMVKEQNIRLDKLDQQLERTRGIGIGIVLATVGLSGVGASLFTRWLGQ |
| Ga0208179_100198311 | F003515 | AGG | MKKLLIFMSIGVLSFMTSIVSAGPPEGMVKQMIPFPAMCLPATVAENHFAVLMGALITDYGVHISMTFSASLDQSRRVAIIENPATGLAGVLIITDEQTCIAFSGEDRQEFIRPPDHPMGEANQDTQT |
| Ga0208179_10019833 | F021556 | AGGAG | VPRKSKFATLWTPIMSRRIEALFDQGGTLVEASRLMGINRSTFNRWLKGTDKEKQNFREVVDIGKEASEAWWIRQGRENLDTRGFNHGLWLMNMVNRFGWTSSHSRKDEKKEVQHSGTVEVKKKVDVDAILEKAINKGIEEMEKSIH |
| Ga0208179_10019839 | F015220 | AGGTGG | MNIDSRVLTVLLFLIVQSATGIWWASNLSSEVERLAGIQGLSIPALEAEAQKCGIAIHNNEAAIKELQEHDKAISGLDVLEFKIDELRKEIASLREVDREIMTQHEKIFDWMAQSSPMQQKGGNPYN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |