NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208179_1002238

Scaffold Ga0208179_1002238


Overview

Basic Information
Taxon OID3300025267 Open in IMG/M
Scaffold IDGa0208179_1002238 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9017
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)38.55Long. (o)13.18Alt. (m)Depth (m)3511
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009892Metagenome / Metatranscriptome311Y
F046430Metagenome / Metatranscriptome151Y
F095615Metagenome105N

Sequences

Protein IDFamilyRBSSequence
Ga0208179_100223811F009892AGGAGMTYSIPLNFGRTRTIDPCNGMNRNDFLCLLEQNNITLDESRMAEVNYYFNLWGDTLRQDNKMGKAHDFDAFIAWMKKA
Ga0208179_100223812F095615N/AMSYNDVMESKNTMMFAAGWSQEIDTTDADRERADLLSYISDTHKSVYGYRPRWDADWANNTPLADLRKNAKSLEDDVVREIERERAVEAHRQADMAAHHVAVASAMKPVSLTFKPFANLKELLV
Ga0208179_100223824F046430AGGAMRQRNEIPPERKAVAVEGISGILSKPRHGCGRNTSVVFYT
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