NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208179_1003227

Scaffold Ga0208179_1003227


Overview

Basic Information
Taxon OID3300025267 Open in IMG/M
Scaffold IDGa0208179_1003227 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7042
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (88.89%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)38.55Long. (o)13.18Alt. (m)Depth (m)3511
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009892Metagenome / Metatranscriptome311Y
F017150Metagenome / Metatranscriptome242Y
F074975Metagenome119Y
F095615Metagenome105N

Sequences

Protein IDFamilyRBSSequence
Ga0208179_10032272F095615GAGMKMTFAHGWTQQIDTTDEGRERADLLSYISDTHKSVYGFRPRWGADWANNTPLADLRTEAQSLEDDVVREIERDRAREAHRQAEMAIHHLAVAKAMKPISFTFKPFANLREMI
Ga0208179_10032273F017150GGAGMAERMNLVVDYEDEADWLQDSIVIENVISGQNHDQLIQELEQAVYDNTRSMYNPPSSHIRIMGYAPADSDVVVKRGVNFWCDDENIWSE
Ga0208179_10032274F009892GGAGMESIPLNFGRTQMVDPTNGMTRHQFLCLLEQNGISLDESRMHEVNHYFNLWGDTMKQDRKSGRPHDFVAYIAWMKKQ
Ga0208179_10032279F074975AGGAGVHEVQKEYAGDSGPNWIVDLEGPDGNVFNLWGILQQFADAYGWEDKEGDMIEESKNGGHYANGDAPYEGYEGVLDYCLHHLSPSPAGVEFRMYGEEVQQISDYRDALENR
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