Scaffold Ga0208179

Basic Information
Taxon OID	3300025267 Open in IMG/M
Scaffold ID	Ga0208179_1003310 Open in IMG/M
Source Dataset Name	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025267 Open in IMG/M

Scaffold ID

Ga0208179_1003310 Open in IMG/M

Source Dataset Name

Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6906
Total Scaffold Genes	18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (83.33%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

6906

Total Scaffold Genes

18 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

15 (83.33%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	Mediterranean Sea
Coordinates	Lat. (^o)	38.55	Long. (^o)	13.18	Alt. (m)	Depth (m)	3511
Location on Map

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Source Dataset Sampling Location

Location Name

Mediterranean Sea

Coordinates

Lat. (^o)

38.55

Long. (^o)

13.18

Alt. (m)

Depth (m)

3511

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041251	Metagenome / Metatranscriptome	160	Y
F049037	Metagenome / Metatranscriptome	147	N
F049696	Metagenome / Metatranscriptome	146	N
F049924	Metagenome / Metatranscriptome	146	N
F060975	Metagenome / Metatranscriptome	132	N
F097503	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208179_10033101	F041251	N/A	MKEYNIEDVTAIAEAIKTGDRVENNIGTVIDGFFWFPDEMEWAAKWQKDEEQDSPYDYFAMLLDPDVFKDTEDEEEIMAGIEYWWHRSQIYAAAYLVNNKPLVATRYTEDIANDSLKSLVAMQHEVQEAYKSKGMKVGPDATPHDIWMIIRTTAQNIHNNVRGMH
Ga0208179_100331010	F049037	GGAG	MSESPCDTCHNYWLCMEGSRACPDFKLFYDTGKITHHDRSPNWYIDMPPHTITVRELSERCGFGKETNKLKHWLGLKVYPLIEDPLGFYFLRHIDGAIENTHTGKSSKRLRHAKAACRQVVLEAKARESTTRSQDNVGAVVQRKMGRTITTIRGDEDSGEEKQGKWGKLSEIIW
Ga0208179_100331011	F049924	AGGAG	MRKYATQRLIAKDVPVHLKGLFEGQNLRFRGRGSRVKAVETVLKSRALRNKYLWEGWQSIPLAKVIKGLTYRFNQDLPLEFADRMSVYSR
Ga0208179_100331017	F049696	GAGG	MSGLELKPMKIHTQKGKRRLWLEQQRYGLDGFEPGSSFKVTYHADSIEIESDPEGSNKVFTRVKKPSKLHPTERKFAIVSLHNSKLKAIFGDTADGVDTECRYEQMPGYLKIWPADLAAKIEARVDQFAEDLAQAA
Ga0208179_10033106	F097503	AGGA	MDCDTFDNVIEVFEQRMIEGCIANEFKCVYTEETGEFVAEINGKFYVAMIREKK
Ga0208179_10033109	F060975	AGGAG	MGKTIRNNLVAKHSEKFNKPKTIRDRKKDYYRPDVKREFEEAIEDMGFDEHNKKDAIIAQYQDDLARSQEDGWPYED

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208179_1003310

Overview

Ecosystem & Geography

Associated Families

Sequences