NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208179_1009230

Scaffold Ga0208179_1009230


Overview

Basic Information
Taxon OID3300025267 Open in IMG/M
Scaffold IDGa0208179_1009230 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3300
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (53.33%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)38.55Long. (o)13.18Alt. (m)Depth (m)3511
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013899Metagenome / Metatranscriptome267Y
F018553Metagenome / Metatranscriptome234Y
F022673Metagenome213Y
F031898Metagenome181Y
F043989Metagenome155Y
F072444Metagenome121N

Sequences

Protein IDFamilyRBSSequence
Ga0208179_100923013F013899N/ALSAAINNMFPDTSEIEEGEKGQFELFQSGVSFMKAGHGKFFDLEDVKKKLTESGQDLFTN
Ga0208179_10092302F031898AGGAGMESTVLEDFQEEISEMDRDDIRLKTIREWEKYRERKNLGIRNHPESCMEKMLEDDQVHGI
Ga0208179_10092303F022673N/AMKKEQIVSPRVEIAEKIHEELLVSLELERKLLKKELTLQETMSERVMVRKDLANCERKIKDLTEQLQKENDRSKATKWNQQS
Ga0208179_10092304F072444N/AMPERENNAFWEIAEIIDREMSILRKMRPVGPKEKALLKKMVEDKEKEHEKRTNSQP
Ga0208179_10092306F018553AGGMLCIPRLRIAILNEEIALWENRLRDNPDDIPYLGYIRTTLKGRVKELEENERLDQEKDEGIKRK
Ga0208179_10092309F043989N/AMIKYGIYIIIIWSLFESSCSSGKGNLPYHPPVFVPMYREECYSDHKNFLCMDKEKEASYTSPFIYFLFMSEMK
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