Scaffold Ga0208179_1010952

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208179_1010952

Scaffold Ga0208179_1010952

Overview

Basic Information
Taxon OID	3300025267 Open in IMG/M
Scaffold ID	Ga0208179_1010952 Open in IMG/M
Source Dataset Name	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2913
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	Mediterranean Sea
Coordinates	Lat. (^o)	38.55	Long. (^o)	13.18	Alt. (m)		Depth (m)	3511
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003161	Metagenome	504	N
F007893	Metagenome / Metatranscriptome	343	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208179_10109524	F003161	GAGG	LSRSGALDRIDVLLSTITDPAFVAVIRAEPLALSGTPVLAYWVQARTNGWQTLTNIGSTTTIMIRAYFRLQASADVRESIELELWDSMVEVDTKLRSDANLDGNCTDSTVGSATVSTLEVSGSLYRTATIPFSIQIYEEVTITP
Ga0208179_10109525	F007893	GGAG	MAEPFGVHFEVTGPVFDGSGLKVMQGIINRGLFDIAVLEGANKVKDQLWGPPASQYWKSKPADRHGAHTRDLKRRVAASQPSDNLAIFNAGGVHYAPKIEAMYHMFENATNAINRDKAALYHKYIGGALIEAFD

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