NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208179_1035974

Scaffold Ga0208179_1035974


Overview

Basic Information
Taxon OID3300025267 Open in IMG/M
Scaffold IDGa0208179_1035974 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1201
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)38.55Long. (o)13.18Alt. (m)Depth (m)3511
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001494Metagenome683Y
F028527Metagenome191N
F047631Metagenome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0208179_10359742F001494N/AMKGKIKMKKTKTDPVKDFQKQAVDQRVCLFYVADRVKGILEDSKTNAQLRDQLEEFKDECVHNIGTNALIERYEY
Ga0208179_10359745F028527GGAMKLDTWLNKTYKLRAETAVGPKVMWGDGKKHGSREIYFSVFLGTPKYDNGLDILWKRGYSPIDALVEWQAYLPGNKKWGRKKKK
Ga0208179_10359746F047631N/AMGKKKEEMRYKFKVTEDGKPEVEKEAMSFKKLLKSLVTPNPKWTGFM
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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