NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208179_1063683

Scaffold Ga0208179_1063683


Overview

Basic Information
Taxon OID3300025267 Open in IMG/M
Scaffold IDGa0208179_1063683 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)795
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)38.55Long. (o)13.18Alt. (m)Depth (m)3511
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010690Metagenome / Metatranscriptome300Y
F068931Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0208179_10636831F010690N/ATGLQEGATSQFILSGTNQIAPTVATNLACALHYSTTPPNRPEHFYHKPDDETNFTTATTTSGNNFTVNDGMWLEDMYVSVFTAVYTVSQSLTGYGEFSSNDFGNSLPLKVPMQPGCASLGATGTQGILALASYHNTHMPMKTSCKINTSFTNDITQTGTTSFIMGVGYTKQ
Ga0208179_10636832F068931GAGGMSSFKPALIKPTYDVANYGHDITLPLNCLSGSTATLTPSTATFVQVLEDSRVPIDEVDLFIMDSDKMAMVHAGNDTDYDESWEWRPDM
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