Scaffold Ga0208179_1064084

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0208179_1064084

Scaffold Ga0208179_1064084

Overview

Basic Information
Taxon OID	3300025267 Open in IMG/M
Scaffold ID	Ga0208179_1064084 Open in IMG/M
Source Dataset Name	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	791
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	Mediterranean Sea
Coordinates	Lat. (^o)	38.55	Long. (^o)	13.18	Alt. (m)		Depth (m)	3511
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001712	Metagenome / Metatranscriptome	648	Y
F016796	Metagenome / Metatranscriptome	244	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208179_10640841	F016796	GAGG	MTYGYDDVTFTALTTDQTETQINSATSLSAPDPAHGFNACVPYMMELGAFTVDESLLVAFRIQSDDVAVEPKKFVLPNINTGDASFT
Ga0208179_10640842	F001712	AGGA	MAASAGQPIGTRAQNFVNSLVGRISGYNPFPQTGTVPQTISIDGMFNKWSGIGLGAWLYGMLPVKQLPQKGKAKTLGKSLLTGGVLGGLFSTGNPHNTNILTPNRAVTVSSGEVSYT

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.