Scaffold Ga0208813_1019086

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208813_1019086

Scaffold Ga0208813_1019086

Overview

Basic Information
Taxon OID	3300025270 Open in IMG/M
Scaffold ID	Ga0208813_1019086 Open in IMG/M
Source Dataset Name	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_904 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1751
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	Mediterranean Sea
Coordinates	Lat. (^o)	43.49	Long. (^o)	7.9	Alt. (m)		Depth (m)	2455
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000720	Metagenome / Metatranscriptome	923	Y
F009812	Metagenome	312	Y
F011410	Metagenome	291	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208813_10190861	F009812	GAGG	MDEFEIEWIPEDTGAPYEAVDPLIDIPAHTIDKLCKKKFGHTNWARMGQMSPEDLVGNPHEFDYENGVIYFENAHMV
Ga0208813_10190863	F000720	GAGG	VNLIKENIKVRQEIPNRMMAATFTLPIDGRRVVGILNYVASDSGLTPMAFWVKLKPTDSYLDRELRASGKLISRCLQNGESLKDLVETLSQDNVIGQMANYLHKNMEDIILGRQLDKKQRELSTDPYAMKE
Ga0208813_10190864	F011410	N/A	LKSEGGKLLKDLSIKLEWSTSNLLVWTVLGVGIGLCIVNLVTIYNIYSVIETMWLEIQQVKEVNISLYQFIEEHKSEFN

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