NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208183_1002227

Scaffold Ga0208183_1002227


Overview

Basic Information
Taxon OID3300025274 Open in IMG/M
Scaffold IDGa0208183_1002227 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_51 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6175
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Acidithiobacillia → Acidithiobacillales → Acidithiobacillaceae → Acidithiobacillus → unclassified Acidithiobacillus → Acidithiobacillus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)39.47Long. (o)11.53Alt. (m)Depth (m)3514
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004651Metagenome / Metatranscriptome429Y
F032041Metagenome181Y

Sequences

Protein IDFamilyRBSSequence
Ga0208183_10022273F004651AGGAGGMAINNLIELNEFHAALTDAELLNQMEHIGALMDGYKAALGHLEQEAYRRMEENQATSIPSEVYVCQMEAGFKYDQPSFGPLKEVFNEADLKKCLTPAHVETVEVPDKWATGTVKSLATRYGAEALRILDKARLETRGRLIFKRRD
Ga0208183_10022278F032041AGGAGGMADLKEKEIMETKVTYTVEAINRPYGAGDAIPWSDAVRTEGLTERKAITLYSQIYRWYHPEPYAWSGHVRIVGSDRWTYTVEPPSPGERSLLCRMYHLDDL
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