NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208183_1003855

Scaffold Ga0208183_1003855


Overview

Basic Information
Taxon OID3300025274 Open in IMG/M
Scaffold IDGa0208183_1003855 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_51 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4330
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (84.62%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)39.47Long. (o)11.53Alt. (m)Depth (m)3514
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003481Metagenome484Y
F006447Metagenome / Metatranscriptome373Y
F021510Metagenome218Y

Sequences

Protein IDFamilyRBSSequence
Ga0208183_100385512F021510AGGMGRYALIITASGLVDNVIEYDGSAPFTPPTGQELRVATDDAEPGGTWNGSAFVRAVVPTPTRTQVLMYEVTNPVASYDADGDPVNKTSDVVAAEKLELKNLLLAELQNGDLSQERTQTLLRLERE
Ga0208183_10038556F006447AGGAMTLFEKLCRMVGDRRIPAFKMPAFKRFRVGFANRHVTTIVVMSIVVSGLAVAVGLYFAVKDVVSSTYNWPEPAEYQVTGDGLQTMGKKNANYPDGTESQTLSIRLADGARISTLRIKDTDLGRTGISKALDISPLTSAVTGSAAYLWIGNLTVTNSSFPTLKMETSDVANLTTGLLCDGHTMAATITNTVPDMVLESERISSVYEVDGSVVDRIQIHITGNSGAFVENLILDNVDAWNGQFYLSRMKIGNMTMNNSNKVGDGSGVDSASCQFESNVAARNITNTIQDRPIKVQ
Ga0208183_10038557F003481N/AMAEIDDLREELERLKASEDKPEKIQMTSGDIVRLVIAAPVVFVWLFLGSRIIISASTSMAVLEQIEPLLLALSILTIPVTAILASLFRTEGNGK
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