NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208183_1015712

Scaffold Ga0208183_1015712


Overview

Basic Information
Taxon OID3300025274 Open in IMG/M
Scaffold IDGa0208183_1015712 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_51 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1780
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)39.47Long. (o)11.53Alt. (m)Depth (m)3514
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009425Metagenome / Metatranscriptome318Y
F022755Metagenome213N
F043620Metagenome / Metatranscriptome156Y

Sequences

Protein IDFamilyRBSSequence
Ga0208183_10157121F022755N/AMMATNGTTAQTKKGFRIPDQTAHITFSGTDYDGAEIWVKLNVSFAHYIALREAAEGDDQAKMAELFGSEVLMEWNLEDASGEPVPATGDGMLQIPLSLAMLIVQHWIEAVSAV
Ga0208183_10157123F009425GAGGMDRGLVIHFKMDRPRDHWREVSCKEIGCVNYAMGWKTILPAGDTANIEMIRRSNMGFREEREDGLIIFTFTPGQECFTGQGGGHRVALERDPIMTQDSRILEPLNFMDNYNDHMYRRSVNHG
Ga0208183_10157125F043620GGTGGMRLLAMIVLAGMVAIVVSVLMLGWLYEVPRRLVRLAACYIGFHGRETWGVNPVNQNSEPYCRDCQRFLVKVY
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