NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208814_1001045

Scaffold Ga0208814_1001045


Overview

Basic Information
Taxon OID3300025276 Open in IMG/M
Scaffold IDGa0208814_1001045 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13851
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (81.82%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameSouth Georgia Island
CoordinatesLat. (o)-50.35Long. (o)-39.82Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001521Metagenome / Metatranscriptome679Y
F002682Metagenome / Metatranscriptome537Y
F006000Metagenome / Metatranscriptome384Y
F031659Metagenome182Y

Sequences

Protein IDFamilyRBSSequence
Ga0208814_100104511F002682AGGMGKQVGSDEKPMTFRSPIYKNTHGCKGANPRPGVYTKQYRDNWDVIFGKKDGNEKKEK
Ga0208814_100104513F001521AGAAGMKLWITEHVNNEGTAIGPYIKADTVAQANRIAIQYGLLVLGEIQELEHEIKIKKRVVH
Ga0208814_100104517F031659GGAGMKSKCKNPNGLHNLKAIIGGQTMDTLKFNSLDKAKRHLKSEGYRFNKAFNCREDKAMFYQGRYGWVKLTSTFDYLNKTSMEQGTVWNIVKL
Ga0208814_10010456F006000AGGAMMNQNARRVIRVVPVITADAYADNDVLFNNTEIPLAVGKSGECSKLVSAMIISKSTQVFDGELFFCQTTQSVGAANSARNISDADFAAAKVLGRLTLDGSADDYTYGGGKVFNFDINLEGAGATDGDVVSKQRFPLLLQAAAGTTSVFCFMLLSGTDVTPNMSVGDLELVLGVEY
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