Basic Information | |
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Taxon OID | 3300025276 Open in IMG/M |
Scaffold ID | Ga0208814_1001045 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 13851 |
Total Scaffold Genes | 22 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 18 (81.82%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition |
Source Dataset Sampling Location | ||||||||
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Location Name | South Georgia Island | |||||||
Coordinates | Lat. (o) | -50.35 | Long. (o) | -39.82 | Alt. (m) | Depth (m) | 4 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F001521 | Metagenome / Metatranscriptome | 679 | Y |
F002682 | Metagenome / Metatranscriptome | 537 | Y |
F006000 | Metagenome / Metatranscriptome | 384 | Y |
F031659 | Metagenome | 182 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0208814_100104511 | F002682 | AGG | MGKQVGSDEKPMTFRSPIYKNTHGCKGANPRPGVYTKQYRDNWDVIFGKKDGNEKKEK |
Ga0208814_100104513 | F001521 | AGAAG | MKLWITEHVNNEGTAIGPYIKADTVAQANRIAIQYGLLVLGEIQELEHEIKIKKRVVH |
Ga0208814_100104517 | F031659 | GGAG | MKSKCKNPNGLHNLKAIIGGQTMDTLKFNSLDKAKRHLKSEGYRFNKAFNCREDKAMFYQGRYGWVKLTSTFDYLNKTSMEQGTVWNIVKL |
Ga0208814_10010456 | F006000 | AGGA | MMNQNARRVIRVVPVITADAYADNDVLFNNTEIPLAVGKSGECSKLVSAMIISKSTQVFDGELFFCQTTQSVGAANSARNISDADFAAAKVLGRLTLDGSADDYTYGGGKVFNFDINLEGAGATDGDVVSKQRFPLLLQAAAGTTSVFCFMLLSGTDVTPNMSVGDLELVLGVEY |
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