Scaffold Ga0208814

Basic Information
Taxon OID	3300025276 Open in IMG/M
Scaffold ID	Ga0208814_1003854 Open in IMG/M
Source Dataset Name	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025276 Open in IMG/M

Scaffold ID

Ga0208814_1003854 Open in IMG/M

Source Dataset Name

Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6086
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (43.75%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

6086

Total Scaffold Genes

16 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (43.75%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	South Georgia Island
Coordinates	Lat. (^o)	-50.35	Long. (^o)	-39.82	Alt. (m)	Depth (m)	4
Location on Map

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Source Dataset Sampling Location

Location Name

South Georgia Island

Coordinates

Lat. (^o)

-50.35

Long. (^o)

-39.82

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005132	Metagenome / Metatranscriptome	411	Y
F006007	Metagenome / Metatranscriptome	384	Y
F008384	Metagenome	334	Y
F013231	Metagenome / Metatranscriptome	273	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208814_100385415	F005132	AGAAG	MVDIIFIDDNYLYQNFPLPKRMERSALLALIQLEQFTSIQDLMGTCLYDHIETKVAAQTLTTEEQGLFKLVKYSLAMYSAKAAISILRTATAITKAEEQKQDQYILDTISTTIDSKIGYINKRVTNYILNNATIKAIAIADGCDNDLFNEEDTYQGSVFYPQDGITVTYCEDGSVSYNQ
Ga0208814_100385416	F006007	N/A	HYIVRRSFGYGAASVQHNEPRKIKAFNKFDKSGTEAVLYIANPYSGNPYYGVPNYISAFHYIESDFAFGKHIKNSAENGFSPRVLATFIGRNMSAEQKREEYAKFKESFTGAEADNFIVSWVKKAEDAPTFEPLDVTNLDKTVDVLSRLNDAKILTAHNVTSPTLFGVMVSGKLGGTGNELVTAYQIFRATETLPNREILLDGVNRILSTTGYDAMDLTIVEEPINLESIKGANTEDISN
Ga0208814_10038547	F013231	GAG	MDIKKLNMEKTYQTCKLIKTKIDNHLHEMAILFANLGTDSTQEEIKEAYLQESYLIDTIEELDPVKGRSLRTSY
Ga0208814_10038549	F008384	N/A	MRYDKSQIEEEAIASVRKGRITEPLGTFILQRSLEIAGSAFVTNGDKELEQALIDAAVMRTCEKFLDYYEEGKSAANLIISIIYSTMTNRIVSLKWKDVYGTNIKGNVLVIENGERLTKLIRYTKDDYLSEKL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208814_1003854

Overview

Ecosystem & Geography

Associated Families

Sequences