NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208814_1005815

Scaffold Ga0208814_1005815


Overview

Basic Information
Taxon OID3300025276 Open in IMG/M
Scaffold IDGa0208814_1005815 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4735
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameSouth Georgia Island
CoordinatesLat. (o)-50.35Long. (o)-39.82Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005129Metagenome / Metatranscriptome411Y
F007892Metagenome / Metatranscriptome343Y
F012505Metagenome / Metatranscriptome280Y
F072257Metagenome / Metatranscriptome121Y
F076593Metagenome / Metatranscriptome118N

Sequences

Protein IDFamilyRBSSequence
Ga0208814_100581511F005129N/AMTYEVKIAKRNLSINLTHHSYIDLGIFNVNATTHSFLYPALKTDWGCDINETDLEFEVNGKRCKYVGFMELYTQLHGDKSFRDFERDLFTQIEEVVAKQIVKEYPGTAITNL
Ga0208814_100581512F072257N/AMQELDRVVHEWCDDNDRWMYIEYDREGKVMGLNYMQGGEYEYFKEYASVSDKGLTEFYKQMLYTFPIEKSSVSLISFINSCMWSYHSAISLHDEYAEPLEEYLKKPCCIQTKYD
Ga0208814_10058154F012505N/AMSKFMIYNAEEVTFILAKTMDEAKQWAIMYCDHSDEIIVREISNIVEYIY
Ga0208814_10058157F007892N/AMGRLTEISPLQDVVNKINAKADFTHNINDTRLERYTVSTRNVFTGRNPSIFLEDTWKVVCDAFNSDEELFGGWLSDDGIYFVDYGVSISNLRIAMHSARVNKQLAIYDNVSQKIIEVTN
Ga0208814_10058158F076593N/AMILTEHQKNELDIVADSVAYYIQDHLRETVSWQMPDALVDDLQEQQFIDAMDYAYEKVLQLITEK
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