Scaffold Ga0208814_1005939

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208814_1005939

Scaffold Ga0208814_1005939

Overview

Basic Information
Taxon OID	3300025276 Open in IMG/M
Scaffold ID	Ga0208814_1005939 Open in IMG/M
Source Dataset Name	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4679
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (90.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	South Georgia Island
Coordinates	Lat. (^o)	-50.35	Long. (^o)	-39.82	Alt. (m)		Depth (m)	4
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F043629	Metagenome	156	Y
F079229	Metagenome	116	Y
F092731	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208814_10059393	F043629	GGA	MANSTINIIVDVLSVDVMLEVEVQWHMSEANELTIDDFYGYHFDNKTGEYERIPYWMHKIIETTQLLEEEYLREIEEAADDNL
Ga0208814_10059396	F092731	GGAGG	MSKSKLSTQATTVYNTLLELNWSEPYLTLEHIQAATGLGRSKLLPKLAELISASKVLHGNEEALGELIETYTPKVKGVAYGYPLDYYKNYNEWMENKLDLPLT
Ga0208814_10059397	F079229	AGG	MTLLQKLDSIQYDFNFQHAIVTNDADLLVSVLRDHGVILTIAKANELIVNLKKGGASHEQ

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