NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208814_1005939

Scaffold Ga0208814_1005939


Overview

Basic Information
Taxon OID3300025276 Open in IMG/M
Scaffold IDGa0208814_1005939 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4679
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameSouth Georgia Island
CoordinatesLat. (o)-50.35Long. (o)-39.82Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043629Metagenome156Y
F079229Metagenome116Y
F092731Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0208814_10059393F043629GGAMANSTINIIVDVLSVDVMLEVEVQWHMSEANELTIDDFYGYHFDNKTGEYERIPYWMHKIIETTQLLEEEYLREIEEAADDNL
Ga0208814_10059396F092731GGAGGMSKSKLSTQATTVYNTLLELNWSEPYLTLEHIQAATGLGRSKLLPKLAELISASKVLHGNEEALGELIETYTPKVKGVAYGYPLDYYKNYNEWMENKLDLPLT
Ga0208814_10059397F079229AGGMTLLQKLDSIQYDFNFQHAIVTNDADLLVSVLRDHGVILTIAKANELIVNLKKGGASHEQ

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