NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208814_1007001

Scaffold Ga0208814_1007001


Overview

Basic Information
Taxon OID3300025276 Open in IMG/M
Scaffold IDGa0208814_1007001 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4258
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameSouth Georgia Island
CoordinatesLat. (o)-50.35Long. (o)-39.82Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016322Metagenome248N
F017401Metagenome241Y
F030152Metagenome186Y
F056910Metagenome137N

Sequences

Protein IDFamilyRBSSequence
Ga0208814_10070012F030152AGGAGMKVTKAAIQALATQSVKDQYARETDKALYLEEIIVLADFDNINFLRADQWDRCIEWLEDATA
Ga0208814_10070013F016322GGCGGMIRYTDHPLFDEIAYAHVHARAQVLADETNRLGWEEIVDGSAQALRAMMLSMNTRRLRNDTFYVGIVDGQLGVIVRKGAKH
Ga0208814_10070014F017401AGGMVYQSNTVHVVAPLGHRQINKDNELCKKLGTLARTDAHVRQCVERESSNFLTIILEFIAALSIMLGLIIAAWCLAVIS
Ga0208814_10070016F056910AGGGGGMPTKIKPNALKRSDAADFCGISVSQFGKMIKLGTMPNARNAGGAKIWLRLELEDALAALALDGERDEGCVDQAFGLNT
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