NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208814_1014132

Scaffold Ga0208814_1014132


Overview

Basic Information
Taxon OID3300025276 Open in IMG/M
Scaffold IDGa0208814_1014132 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2783
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (30.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameSouth Georgia Island
CoordinatesLat. (o)-50.35Long. (o)-39.82Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000352Metagenome / Metatranscriptome1247Y
F005454Metagenome / Metatranscriptome400Y
F022015Metagenome / Metatranscriptome216Y
F023447Metagenome / Metatranscriptome210Y
F076156Metagenome / Metatranscriptome118N

Sequences

Protein IDFamilyRBSSequence
Ga0208814_10141321F023447N/AMETQAFMGTGELIPRLMAQVGSASFGMALARKNGFLNTDGSMSAKGIARNGMDAEERAIDRAGGTGIYNKYTNTVKQSS
Ga0208814_101413210F076156AGCAGMSKMNEIDEIAQYQADVILETLKEQVEWSIADYDLNGDDYYNLRD
Ga0208814_10141324F022015N/AMYYQSKSNMTWKQAFAEVNASVLKHEIICAIASEIVGKPVENLIGFTDEQRNLVDNDYYNTTELCE
Ga0208814_10141325F005454N/AMRIIKHYNSHFPEKQTYKCTIRYTTKFGSLDEVTQWRDNQLKNEVYYKSLEESNTKAAGLFYKTLTYKGD
Ga0208814_10141329F000352N/AMRNIKLTENDCTFVHYVLKYYANNNDNLDSDDQDEIYEVAAKFK
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Institute for Fundamental Biomedical Research
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