Scaffold Ga0208814_1015070

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208814_1015070

Scaffold Ga0208814_1015070

Overview

Basic Information
Taxon OID	3300025276 Open in IMG/M
Scaffold ID	Ga0208814_1015070 Open in IMG/M
Source Dataset Name	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2676
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	South Georgia Island
Coordinates	Lat. (^o)	-50.35	Long. (^o)	-39.82	Alt. (m)		Depth (m)	4
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F016322	Metagenome	248	N
F017401	Metagenome	241	Y
F056910	Metagenome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208814_10150703	F016322	GGCGG	MIRDTNHPLFDEIAYAHVHARGQVLSDEANRVGWEEIVDSSAMAIRAMMLGLDTKRLRNDTFYARMMDGTLSINVIVRKNAKH
Ga0208814_10150704	F017401	N/A	MVNIGMVVTAGQPQVNKDNELCKKLGTLARTEQHIHQCVEHESSNFLTILLEFIAALSIMLGLIIAAWCLAVIS
Ga0208814_10150706	F056910	GAGG	MPTKIKPNAMRKSDAADFCGISVSQFGKMIKLGTMPNARNAGGAKIWLRLELEDALAALALDGERDEGCDTNKVFGIGT

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