Basic Information | |
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Taxon OID | 3300025277 Open in IMG/M |
Scaffold ID | Ga0208180_1078692 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s16 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 773 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition |
Source Dataset Sampling Location | ||||||||
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Location Name | Mediterranean Sea | |||||||
Coordinates | Lat. (o) | 39.48 | Long. (o) | 7.24 | Alt. (m) | Depth (m) | 2766 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F018619 | Metagenome | 234 | Y |
F083250 | Metagenome | 113 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0208180_10786921 | F018619 | AGGGGG | MAWTTPLSWSSTMVTGAIMNTHIRDNLNALSTHAHSGSAGDGSGTLDGVSLGALTVPQMADQSGSPSTAGRLQRNGNNLEYYNGTAMVGLYADAAAATASLRSLGTGATQAAAGNHTH |
Ga0208180_10786922 | F083250 | AGGGGG | MAWTTPLDWTGISDDIVTAAQLNQQVRDNLNVLSTHAHTGAAGMGVSTLSGVSLTAIGTLTFADQSANPDAAGEIQRNGNEVLWYGSSVVN |
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