NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207417_1062401

Scaffold Ga0207417_1062401


Overview

Basic Information
Taxon OID3300025278 Open in IMG/M
Scaffold IDGa0207417_1062401 Open in IMG/M
Source Dataset NameMarine viral communities from the Deep Pacific Ocean - MSP-82 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)578
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-25.4941Long. (o)-179.5286Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027534Metagenome / Metatranscriptome194N
F033390Metagenome177Y

Sequences

Protein IDFamilyRBSSequence
Ga0207417_10624011F033390N/ATPQTISIDGIFNKWSGIGAASFIYGLLPVKQLPHKGKAKTLGKSLLSAGILSGIFMPTGNPHNTNLLTSRPAITVSSSEVSYT
Ga0207417_10624012F027534GAGGMTYGYDDATFTAMSGVTEVQINSGTSLTAPDPAHGLLAVIPYLGELGAFTTNQSLFCAFRVQSDDVAVEPKKFVLPNVNTGDAAFTSVQAPALLAYPLDVPLNGGEHINY

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