Scaffold Ga0208449_1040895

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208449_1040895

Scaffold Ga0208449_1040895

Overview

Basic Information
Taxon OID	3300025280 Open in IMG/M
Scaffold ID	Ga0208449_1040895 Open in IMG/M
Source Dataset Name	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s17 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1295
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	Mediterranean Sea
Coordinates	Lat. (^o)	39.48	Long. (^o)	7.31	Alt. (m)		Depth (m)	2520
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F012581	Metagenome	279	N
F021207	Metagenome	220	Y
F105326	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208449_10408953	F021207	AGGAG	MSKRFKQVNIQQFAIFVKELKIGLLTQEEFVYAVEEIYMSIFRHNTDGDFVIPTMPNEEGNWKVHKSSATKEEVMELIKEGRVTWNKDVI
Ga0208449_10408954	F105326	GGAG	MEQRRNLTPTQHWELHQGLWNMLGCDMQLKHKNKNTVVYVDRKSKRQYTYSTLGFIEEKRYANKKN
Ga0208449_10408956	F012581	AGGAG	VAKYTLYAKKVYYYRKDINAQDKKSAEKRSADYEADDNAERLFEPSGEEFYITSIEESDD

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