Scaffold Ga0207881_1016783

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0207881_1016783

Scaffold Ga0207881_1016783

Overview

Basic Information
Taxon OID	3300025281 Open in IMG/M
Scaffold ID	Ga0207881_1016783 Open in IMG/M
Source Dataset Name	Marine viral communities from the Deep Pacific Ocean - MSP-97 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1307
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexi incertae sedis → SAR202 cluster → SAR202 cluster bacterium AD-802-F09_MRT_200m	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	9.2013	Long. (^o)	-163.4956	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003481	Metagenome	484	Y
F022524	Metagenome	214	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207881_10167832	F003481	GGAG	VAEIDDLREELERLKAPTSDKGDKIQMTSGDIVRLIIAAPVVFVWLFLGSRIIISATTSQGVLENIEPLLLALSILTIPVTAILSSLFRVDGNGR
Ga0207881_10167833	F022524	GGA	MTLFEKICRLIGDRRIPSPRMPAFKLFKLPAFRLFTVGFANKHVTTVVVMAIAVSAAAVSVGLYFAIKDVASSTYNWPEAATYQVTEAGLQTMGKKNEDYPDGTESQTLSIRL

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