Scaffold Ga0208030_1013698

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208030_1013698

Scaffold Ga0208030_1013698

Overview

Basic Information
Taxon OID	3300025282 Open in IMG/M
Scaffold ID	Ga0208030_1013698 Open in IMG/M
Source Dataset Name	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_M9 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2873
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	Mediterranean Sea
Coordinates	Lat. (^o)	38.38	Long. (^o)	4.65	Alt. (m)		Depth (m)	2720
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007837	Metagenome / Metatranscriptome	344	Y
F016759	Metagenome / Metatranscriptome	245	Y
F055296	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208030_10136982	F007837	N/A	LVSGLAVLPKVSARNLSLKLNVVVDLKTTVNPAIINYPAAYQSLAQSILIDNQDAANAVTVRLNRQTNTITIPGGGFRTINDSWIEQIDLTGPSTNTQLTAQISPLSQISPYGGGVTN
Ga0208030_10136983	F016759	GAG	MSMEPIQRQMTNPAVGALNTPALLQDNVTLLTFIQLNIPNTILDMYNSPDPAAAADFYTYELQKNSISTGRNFFSTAMSTASAGRAAVGPIRLASGQLQMQGTPVGAAAPINDQNIVIKFANGF
Ga0208030_10136986	F055296	N/A	VENMAKYDKFREIQQGRNKKIGQRLNELIEKEVKEADPQFKELTAIRSKDAPDIIIPNPFVMDQFHSIPKWIEYMQTLTKEEHGELYNHLLALKLVTHEFEDFRLE

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